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281 lines
8.5 KiB
281 lines
8.5 KiB
from random import Random
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from typing import List
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import pytest
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from spacy.matcher import Matcher
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from spacy.tokens import Doc, Span, SpanGroup
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from spacy.util import filter_spans
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@pytest.fixture
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def doc(en_tokenizer):
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doc = en_tokenizer("0 1 2 3 4 5 6")
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matcher = Matcher(en_tokenizer.vocab, validate=True)
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# fmt: off
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matcher.add("4", [[{}, {}, {}, {}]])
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matcher.add("2", [[{}, {}, ]])
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matcher.add("1", [[{}, ]])
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# fmt: on
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matches = matcher(doc)
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spans = []
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for match in matches:
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spans.append(
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Span(doc, match[1], match[2], en_tokenizer.vocab.strings[match[0]])
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)
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Random(42).shuffle(spans)
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doc.spans["SPANS"] = SpanGroup(
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doc, name="SPANS", attrs={"key": "value"}, spans=spans
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)
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return doc
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@pytest.fixture
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def other_doc(en_tokenizer):
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doc = en_tokenizer("0 1 2 3 4 5 6")
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matcher = Matcher(en_tokenizer.vocab, validate=True)
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# fmt: off
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matcher.add("4", [[{}, {}, {}, {}]])
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matcher.add("2", [[{}, {}, ]])
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matcher.add("1", [[{}, ]])
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# fmt: on
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matches = matcher(doc)
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spans = []
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for match in matches:
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spans.append(
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Span(doc, match[1], match[2], en_tokenizer.vocab.strings[match[0]])
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)
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Random(42).shuffle(spans)
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doc.spans["SPANS"] = SpanGroup(
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doc, name="SPANS", attrs={"key": "value"}, spans=spans
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)
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return doc
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@pytest.fixture
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def span_group(en_tokenizer):
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doc = en_tokenizer("0 1 2 3 4 5 6")
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matcher = Matcher(en_tokenizer.vocab, validate=True)
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# fmt: off
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matcher.add("4", [[{}, {}, {}, {}]])
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matcher.add("2", [[{}, {}, ]])
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matcher.add("1", [[{}, ]])
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# fmt: on
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matches = matcher(doc)
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spans = []
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for match in matches:
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spans.append(
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Span(doc, match[1], match[2], en_tokenizer.vocab.strings[match[0]])
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)
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Random(42).shuffle(spans)
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doc.spans["SPANS"] = SpanGroup(
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doc, name="SPANS", attrs={"key": "value"}, spans=spans
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)
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def test_span_group_copy(doc):
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span_group = doc.spans["SPANS"]
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clone = span_group.copy()
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assert clone != span_group
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assert clone.name == span_group.name
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assert clone.attrs == span_group.attrs
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assert len(clone) == len(span_group)
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assert list(span_group) == list(clone)
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clone.name = "new_name"
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clone.attrs["key"] = "new_value"
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clone.append(Span(doc, 0, 6, "LABEL"))
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assert clone.name != span_group.name
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assert clone.attrs != span_group.attrs
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assert span_group.attrs["key"] == "value"
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assert list(span_group) != list(clone)
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# can't copy if the character offsets don't align to tokens
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doc2 = Doc(doc.vocab, words=[t.text + "x" for t in doc])
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with pytest.raises(ValueError):
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span_group.copy(doc=doc2)
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# can copy with valid character offsets despite different tokenization
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doc3 = doc.copy()
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with doc3.retokenize() as retokenizer:
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retokenizer.merge(doc3[0:2])
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retokenizer.merge(doc3[3:6])
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span_group = SpanGroup(doc, spans=[doc[0:6], doc[3:6]])
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for span1, span2 in zip(span_group, span_group.copy(doc=doc3)):
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assert span1.start_char == span2.start_char
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assert span1.end_char == span2.end_char
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def test_span_group_set_item(doc, other_doc):
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span_group = doc.spans["SPANS"]
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index = 5
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span = span_group[index]
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span.label_ = "NEW LABEL"
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span.kb_id = doc.vocab.strings["KB_ID"]
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assert span_group[index].label != span.label
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assert span_group[index].kb_id != span.kb_id
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span_group[index] = span
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assert span_group[index].start == span.start
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assert span_group[index].end == span.end
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assert span_group[index].label == span.label
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assert span_group[index].kb_id == span.kb_id
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assert span_group[index] == span
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with pytest.raises(IndexError):
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span_group[-100] = span
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with pytest.raises(IndexError):
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span_group[100] = span
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span = Span(other_doc, 0, 2)
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with pytest.raises(ValueError):
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span_group[index] = span
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def test_span_group_has_overlap(doc):
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span_group = doc.spans["SPANS"]
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assert span_group.has_overlap
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def test_span_group_concat(doc, other_doc):
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span_group_1 = doc.spans["SPANS"]
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spans = [doc[0:5], doc[0:6]]
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span_group_2 = SpanGroup(
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doc,
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name="MORE_SPANS",
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attrs={"key": "new_value", "new_key": "new_value"},
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spans=spans,
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)
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span_group_3 = span_group_1._concat(span_group_2)
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assert span_group_3.name == span_group_1.name
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assert span_group_3.attrs == {"key": "value", "new_key": "new_value"}
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span_list_expected = list(span_group_1) + list(span_group_2)
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assert list(span_group_3) == list(span_list_expected)
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# Inplace
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span_list_expected = list(span_group_1) + list(span_group_2)
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span_group_3 = span_group_1._concat(span_group_2, inplace=True)
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assert span_group_3 == span_group_1
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assert span_group_3.name == span_group_1.name
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assert span_group_3.attrs == {"key": "value", "new_key": "new_value"}
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assert list(span_group_3) == list(span_list_expected)
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span_group_2 = other_doc.spans["SPANS"]
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with pytest.raises(ValueError):
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span_group_1._concat(span_group_2)
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def test_span_doc_delitem(doc):
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span_group = doc.spans["SPANS"]
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length = len(span_group)
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index = 5
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span = span_group[index]
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next_span = span_group[index + 1]
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del span_group[index]
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assert len(span_group) == length - 1
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assert span_group[index] != span
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assert span_group[index] == next_span
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with pytest.raises(IndexError):
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del span_group[-100]
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with pytest.raises(IndexError):
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del span_group[100]
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def test_span_group_add(doc):
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span_group_1 = doc.spans["SPANS"]
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spans = [doc[0:5], doc[0:6]]
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span_group_2 = SpanGroup(
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doc,
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name="MORE_SPANS",
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attrs={"key": "new_value", "new_key": "new_value"},
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spans=spans,
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)
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span_group_3_expected = span_group_1._concat(span_group_2)
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span_group_3 = span_group_1 + span_group_2
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assert len(span_group_3) == len(span_group_3_expected)
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assert span_group_3.attrs == {"key": "value", "new_key": "new_value"}
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assert list(span_group_3) == list(span_group_3_expected)
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def test_span_group_iadd(doc):
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span_group_1 = doc.spans["SPANS"].copy()
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spans = [doc[0:5], doc[0:6]]
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span_group_2 = SpanGroup(
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doc,
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name="MORE_SPANS",
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attrs={"key": "new_value", "new_key": "new_value"},
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spans=spans,
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)
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span_group_1_expected = span_group_1._concat(span_group_2)
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span_group_1 += span_group_2
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assert len(span_group_1) == len(span_group_1_expected)
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assert span_group_1.attrs == {"key": "value", "new_key": "new_value"}
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assert list(span_group_1) == list(span_group_1_expected)
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span_group_1 = doc.spans["SPANS"].copy()
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span_group_1 += spans
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assert len(span_group_1) == len(span_group_1_expected)
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assert span_group_1.attrs == {
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"key": "value",
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}
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assert list(span_group_1) == list(span_group_1_expected)
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def test_span_group_extend(doc):
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span_group_1 = doc.spans["SPANS"].copy()
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spans = [doc[0:5], doc[0:6]]
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span_group_2 = SpanGroup(
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doc,
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name="MORE_SPANS",
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attrs={"key": "new_value", "new_key": "new_value"},
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spans=spans,
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)
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span_group_1_expected = span_group_1._concat(span_group_2)
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span_group_1.extend(span_group_2)
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assert len(span_group_1) == len(span_group_1_expected)
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assert span_group_1.attrs == {"key": "value", "new_key": "new_value"}
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assert list(span_group_1) == list(span_group_1_expected)
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span_group_1 = doc.spans["SPANS"]
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span_group_1.extend(spans)
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assert len(span_group_1) == len(span_group_1_expected)
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assert span_group_1.attrs == {"key": "value"}
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assert list(span_group_1) == list(span_group_1_expected)
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def test_span_group_dealloc(span_group):
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with pytest.raises(AttributeError):
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print(span_group.doc)
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@pytest.mark.issue(11975)
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def test_span_group_typing(doc: Doc):
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"""Tests whether typing of `SpanGroup` as `Iterable[Span]`-like object is accepted by mypy."""
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span_group: SpanGroup = doc.spans["SPANS"]
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spans: List[Span] = list(span_group)
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for i, span in enumerate(span_group):
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assert span == span_group[i] == spans[i]
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filter_spans(span_group)
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def test_span_group_init_doc(en_tokenizer):
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"""Test that all spans must come from the specified doc."""
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doc1 = en_tokenizer("a b c")
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doc2 = en_tokenizer("a b c")
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span_group = SpanGroup(doc1, spans=[doc1[0:1], doc1[1:2]])
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with pytest.raises(ValueError):
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span_group = SpanGroup(doc1, spans=[doc1[0:1], doc2[1:2]])
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